Alignment Workflow for Deformed EM images
Alignment workflow for deformed electron microscopy images of entire planktonic animals | Biosciences | Open Call Project | 2025 |
Genome processing pipeline
Improving and extending a genome processing pipeline and dashboard | | | | |
NeuroSeq extension
Improve quality of neuroseq prototype and extend it to interface with laser and microscope | | | | |
MONDEY
MONDEY (Milestones of Normal Development in Early Years) website | | | | |
CebraEM
Quantifying organelle geometry and morphology based on volume electron microscopy data. | Biosciences | Open Call Project | 2023 |
Identifying stolen cultural heritage
Identification of (potentially stolen) cultural heritage objects with computer vision methods. | | | | |
Refactoring of PoWR code
Modernisation of the Potsdam Wolf-Rayet Stellar Atmospheres code. | | | | |
rubix
Consultation on software architecture for GPU-computing with JAX and software development best practices | | | | |
SIMPA
Performance improvements for the toolkit for Simulation and Image Processing for Photonics and Acoustics (SIMPA). | | | | |
Dust polarization observations
Improve portability and quality of code and tooling | | | | |
Misinformation campaigns characteristics
Open-source software to analyze image and text content of social media posts | | | | |
Moralization in written texts
Interface to train language models for multi-label token classification | | | | |
Parafields
Development of an MPI-parallel Python library for the generation of stationary Gaussian fields based on an existing C++ library | Scientific Computing | Open Call Project | 2022 |
Predictive modeling in TB screening
Develop a machine learning model to predict TB disease | Medicine | Open Call Project | 2022 |
Ribosome profiling
Enhance the quality, portability and maintainability of the ribosome profiling analysis tool rp-bp | | | | |
Visuomotor Serial Targeting Task (VSTT)
Open source software with graphical user interface for designing, running and analyzing visuomotor targeting experiments | | | | |
AFWizard: Adaptive ground point filtering for aerial archaelogy
Python framework to facilitate complex ground point filtering workflows in archaeologic prospection | | | | |
Corpus and argumentation
Open-source software to automatize annotation and database encoding of linguistic texts | | | | |
Neuroscience data processing and analysis
Deploying and improving analysis pipelines on HPC resources | | | | |
py4dgeo: Change detection 4D point cloud data
Library of algorithms for the spatio-temporal analysis of 3D point cloud data. Provides an extensible, open Python framework based on a high performance C++ core. | | Funded Project, Open Call Project | | |
Systems biology parameter estimation GUI
Extend parameter fitting functionality and integrate into the existing GUI application | | | | |
